API Reference

This section provides comprehensive documentation for the biallelic_py package API. All public classes, functions, and modules are documented here with examples.

Core Modules

• Data Models Module (biallelic.models)
  • Aberration
  • AberrationType
  • DoubleHit
  • DoubleHitType
  • Gender
  • OmicsType
  • SampleDonor
  • Overview
  • Usage Examples
  • See Also
• Orchestrator Module (biallelic.bi)
  • Aberrations
  • Overview
  • Workflow
  • Key Attributes
  • Configuration Format
  • See Also
• Logging Module (biallelic.logging)
  • ExtendedLogger
  • SimpleLogger
  • Overview
  • Basic Usage
  • Output
  • Configuration
  • Log Format
  • Advanced Usage
  • See Also
• Utilities Module (biallelic.misc)
  • DefaultHelpParser
  • SubcommandHelpFormatter
  • camel_case_split()
  • color_palettes()
  • generate_uid()
  • get_module_method()
  • get_modules_names()
  • import_module()
  • make_ucsc_format()
  • package_modules()
  • try_import()
  • xopen()
  • Overview
  • File I/O Functions
  • String Utilities
  • Module Discovery
  • Unique ID Generation
  • Visualization Support
  • Argparse Utilities
  • See Also

Note

The API reference is auto-generated from the source code docstrings. For the most up-to-date information, see the source code at https://github.com/weischenfeldt/biallelic_py/tree/master/biallelic