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Requirements

So Python is required to use the software. Only Python3 (Python >= 3.9) is supported.

Installation

Note

It is strongly advised to use virtualenv to install the module locally.

From git with pip:

pip install git+https://git@bitbucket.org/weischenfeldt/biallelic_py.git

Using the library:

After installation the biallelic_inactivation command line performs the analysis:

$ biallelic_inactivation --help
usage: biallelic_inactivation [-h] manifest

Find biallelic inactivations patterns in a multi-analysis sequencing cohort

positional arguments:
  manifest    Manifest in YAML format, containing the files path and
              description, relative to the current working directory

optional arguments:
  -h, --help  show this help message and exit

This is version 0.1.0 - Francesco Favero - 6 March 2022