Get started¶
Requirements¶
So Python is required to use the software. Only Python3 (Python >= 3.9) is supported.
Installation¶
Note
It is strongly advised to use virtualenv to install the module locally.
From git with pip:¶
pip install git+https://git@bitbucket.org/weischenfeldt/biallelic_py.git
Using the library:¶
After installation the biallelic_inactivation command line performs the analysis:
$ biallelic_inactivation --help
usage: biallelic_inactivation [-h] manifest
Find biallelic inactivations patterns in a multi-analysis sequencing cohort
positional arguments:
manifest Manifest in YAML format, containing the files path and
description, relative to the current working directory
optional arguments:
-h, --help show this help message and exit
This is version 0.1.0 - Francesco Favero - 6 March 2022